Mattia Prosperi

Mattia Prosperi, PhD, FAMIA

Professor And Associate Dean For AI And Innovation

Department: College of Public Health and Health Professions Dean's Office
Business Phone: (352) 273-5860
Business Email: m.prosperi@ufl.edu

Teaching Profile

Courses Taught
2018,2020-2024
PHC7918 Independent Study
2018,2020-2022,2022-2023
PHC7083 Computational Data Science for Epidemiology
2020-2024
PHC7199 Topics in Precision Medicine and Public Health Informatics
2017,2019-2020
PHC6601 Seminar in Contemporary Public Health Issues
2018-2019,2023-2024
PHC7980 Research for Doctoral Dissertation
2016-2019
PHC6937 Special Topics in Public Health
2018
MAT7979 Advanced Research
2018
CIS7979 Advanced Research
2016-2018,2022-2024
PHC7979 Advanced Research
2017
PHC6946 Public Health Internship
2017
PHC4101 Public Health Concepts
2017
PHC7000 Epidemiology Seminar II: Critical Evaluation, Research Proposals, and Methods
2021-2022
PHC6941 MPH Applied Practice Experience

Research Profile

Computational epidemiology Bio-health informatics Artificial intelligence Viral – bacterial diseases

Open Researcher and Contributor ID (ORCID)

0000-0002-9021-5595

Publications

2024
Assessing HIV-related stigma in the clinical setting: are providers in Florida interested?
AIDS Care. 36(2):248-254 [DOI] 10.1080/09540121.2023.2279981. [PMID] 37939211.
2024
Demographics, Trends, and Clinical Characteristics of HIV Pre-Exposure Prophylaxis Recipients and People Newly Diagnosed with HIV from Large Electronic Health Records in Florida.
AIDS patient care and STDs. 38(1):14-22 [DOI] 10.1089/apc.2023.0220. [PMID] 38227279.
2024
Dynamic Prognosis Prediction for Patients on DAPT After Drug‐Eluting Stent Implantation: Model Development and Validation
Journal of the American Heart Association. 13(3) [DOI] 10.1161/jaha.123.029900.
2024
Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders.
bioRxiv : the preprint server for biology. [DOI] 10.1101/2023.10.24.563721. [PMID] 37961168.
2024
Quantifying Health Outcome Disparity in Invasive Methicillin-Resistant Staphylococcus aureus Infection using Fairness Algorithms on Real-World Data.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29:419-432 [PMID] 38160296.
2024
Real-World Effectiveness of Lung Cancer Screening Using Deep Learning-Based Counterfactual Prediction.
Studies in health technology and informatics. 310:419-423 [DOI] 10.3233/SHTI230999. [PMID] 38269837.
2024
Spatial and temporal analysis of HIV clinical outcomes in Florida reveals counties with persistent racial and ethnic disparities during 2012-2019.
BMC public health. 24(1) [DOI] 10.1186/s12889-024-17944-w. [PMID] 38459461.
2023
A Computable Phenotype for the Identification of Sexual and Gender Minorities in Electronic Health Records.
AMIA … Annual Symposium proceedings. AMIA Symposium. 2023:1057-1066 [PMID] 38222414.
2023
Application of a practice-based approach in variable selection for a prediction model development study of hospital-induced delirium.
BMC medical informatics and decision making. 23(1) [DOI] 10.1186/s12911-023-02278-1. [PMID] 37704994.
2023
Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions
JMIR Formative Research. 7 [DOI] 10.2196/39409. [PMID] 36848460.
2023
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer’s disease and related dementias.
International journal of medical informatics. 170 [DOI] 10.1016/j.ijmedinf.2022.104973. [PMID] 36577203.
2023
Clinical Prediction Models for Hospital-Induced Delirium Using Structured and Unstructured Electronic Health Record Data: Protocol for a Development and Validation Study
JMIR Research Protocols. 12 [DOI] 10.2196/48521. [PMID] 37943599.
2023
Convenience, efficacy, safety, and durability of INSTI-based antiretroviral therapies: evidence from the Italian MaSTER cohort.
European journal of medical research. 28(1) [DOI] 10.1186/s40001-023-01276-3. [PMID] 37596688.
2023
Evaluating the perceptions of pesticide use, safety, and regulation and identifying common pesticide-related topics on Twitter.
Integrated environmental assessment and management. 19(6):1581-1599 [DOI] 10.1002/ieam.4777. [PMID] 37070476.
2023
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing
Nucleic Acids Research. 51(D1):D744-D752 [DOI] 10.1093/nar/gkac1047. [PMID] 36382407.
2023
Network typologies predict future molecular linkages in the network of HIV transmission.
AIDS (London, England). 37(11):1739-1746 [DOI] 10.1097/QAD.0000000000003621. [PMID] 37289578.
2023
Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data.
Proceedings of machine learning research. 218:98-115 [PMID] 37854935.
2023
Risk of bias in prognostic models of hospital-induced delirium for medical-surgical units: A systematic review.
PloS one. 18(8) [DOI] 10.1371/journal.pone.0285527. [PMID] 37590196.
2023
The K-mer antibiotic resistance gene variant analyzer (KARGVA).
Frontiers in microbiology. 14 [DOI] 10.3389/fmicb.2023.1060891. [PMID] 36960290.
2023
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records
Journal of the American Medical Informatics Association. 31(1):165-173 [DOI] 10.1093/jamia/ocad194. [PMID] 37812771.
2023
Variational Temporal Deconfounder for Individualized Treatment Effect Estimation with Longitudinal Observational Data.
Research square. [DOI] 10.21203/rs.3.rs-2536079/v1. [PMID] 36798248.
2022
A scoping review of semantic integration of health data and information.
International journal of medical informatics. 165 [DOI] 10.1016/j.ijmedinf.2022.104834. [PMID] 35863206.
2022
A systems immunology approach to investigate cytokine responses to viruses and bacteria and their association with disease
Scientific Reports. 12(1) [DOI] 10.1038/s41598-022-16509-4. [PMID] 35931775.
2022
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data
GigaScience. 11 [DOI] 10.1093/gigascience/giac029. [PMID] 35583675.
2022
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions.
Artificial intelligence in medicine. 130 [DOI] 10.1016/j.artmed.2022.102326. [PMID] 35809965.
2022
Biases in using social media data for public health surveillance: A scoping review.
International journal of medical informatics. 164 [DOI] 10.1016/j.ijmedinf.2022.104804. [PMID] 35644051.
2022
Development of a Prediction Model for Antibiotic-Resistant Urinary Tract Infections Using Integrated Electronic Health Records from Multiple Clinics in North-Central Florida.
Infectious diseases and therapy. 11(5):1869-1882 [DOI] 10.1007/s40121-022-00677-x. [PMID] 35908268.
2022
DR-VIDAL – Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation on Real World Data.
AMIA … Annual Symposium proceedings. AMIA Symposium. 2022:485-494 [PMID] 37128454.
2022
Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine. 2022:2934-2939 [DOI] 10.1109/bibm55620.2022.9995662. [PMID] 36865610.
2022
KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing.
Frontiers in bioengineering and biotechnology. 10 [DOI] 10.3389/fbioe.2022.1016408. [PMID] 36324897.
2022
Longitudinal trajectories of HIV care engagement since diagnosis among persons with HIV in the Florida Ryan White program.
AIDS and behavior. 26(10):3164-3173 [DOI] 10.1007/s10461-022-03659-9. [PMID] 35362911.
2022
Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin.
Microbiology spectrum. 10(6) [DOI] 10.1128/spectrum.01889-22. [PMID] 36222706.
2022
Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2022:274-283 [PMID] 35854723.
2022
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.
Bioinformatics (Oxford, England). 38(3):856-860 [DOI] 10.1093/bioinformatics/btab725. [PMID] 34672334.
2022
Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine.
BMJ open. 12(6) [DOI] 10.1136/bmjopen-2021-059715. [PMID] 35725267.
2022
Severe Acute Respiratory Syndrome Coronavirus 2 Delta Vaccine Breakthrough Transmissibility in Alachua County, Florida.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 75(9):1618-1627 [DOI] 10.1093/cid/ciac197. [PMID] 35271704.
2022
Simulating Colorectal Cancer Trials Using Real-World Data.
JCO clinical cancer informatics. 6 [DOI] 10.1200/CCI.21.00195. [PMID] 35839432.
2022
Syndromic Surveillance Systems for Mass Gatherings: A Scoping Review.
International journal of environmental research and public health. 19(8) [DOI] 10.3390/ijerph19084673. [PMID] 35457541.
2022
Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes.
Microbiome. 10(1) [DOI] 10.1186/s40168-022-01368-y. [PMID] 36324140.
2022
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing.
Briefings in bioinformatics. 23(2) [DOI] 10.1093/bib/bbac020. [PMID] 35212354.
2022
Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies.
IEEE International Conference on Bioinformatics and Biomedicine workshops. IEEE International Conference on Bioinformatics and Biomedicine. 2022:2940-2944 [DOI] 10.1109/bibm55620.2022.9995364. [PMID] 36780250.
2021
Bagged random causal networks for interventional queries on observational biomedical datasets.
Journal of biomedical informatics. 115 [DOI] 10.1016/j.jbi.2021.103689. [PMID] 33548542.
2021
Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as potential therapeutic targets.
Journal of neurovirology. 27(1):101-115 [DOI] 10.1007/s13365-020-00927-z. [PMID] 33405206.
2021
Causal AI with Real World Data: Do Statins Protect from Alzheimer’s Disease Onset?
ICMHI 2021 : 2021 5th International Conference on Medical and Health Informatics : May 14-16, 2021, Kyoto, Japan. International Conference on Medical and Health Informatics (5th : 2021 : Online). 2021:296-303 [DOI] 10.1145/3472813.3473206. [PMID] 37954527.
2021
Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bacteremia infections.
International journal of medical informatics. 153 [DOI] 10.1016/j.ijmedinf.2021.104531. [PMID] 34332468.
2021
Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.
AMIA … Annual Symposium proceedings. AMIA Symposium. 2021:1264-1273 [PMID] 35308985.
2021
Deep propensity network using a sparse autoencoder for estimation of treatment effects
Journal of the American Medical Informatics Association. 28(6):1197-1206 [DOI] 10.1093/jamia/ocaa346. [PMID] 33594415.
2021
Evaluating the Diagnostic Paradigm for Group A and Non–Group A Streptococcal Pharyngitis in the College Student Population
Open Forum Infectious Diseases. 8(11) [DOI] 10.1093/ofid/ofab482. [PMID] 34805428.
2021
Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation.
Frontiers in genetics. 12 [DOI] 10.3389/fgene.2021.564186. [PMID] 33552147.
2021
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer’s disease
npj Digital Medicine. 4(1) [DOI] 10.1038/s41746-021-00452-1. [PMID] 33990663.
2021
Fast and exact quantification of motif occurrences in biological sequences
BMC Bioinformatics. 22(1) [DOI] 10.1186/s12859-021-04355-6. [PMID] 34537012.
2021
Finding Overlapping Rmaps via Clustering.
IEEE/ACM transactions on computational biology and bioinformatics. PP [DOI] 10.1109/TCBB.2021.3132534. [PMID] 34890332.
2021
KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data.
… IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics. 2021 [DOI] 10.1109/bhi50953.2021.9508479. [PMID] 34447942.
2021
Optimizing Identification of People Living with HIV from Electronic Medical Records: Computable Phenotype Development and Validation.
Methods of information in medicine. 60(3-04):84-94 [DOI] 10.1055/s-0041-1735619. [PMID] 34592777.
2021
Prevalence and hospital charges from firearm injuries treated in US emergency departments from 2006 to 2016.
Surgery. 169(5):1188-1198 [DOI] 10.1016/j.surg.2020.11.009. [PMID] 33384161.
2021
Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN).
Computer methods and programs in biomedicine update. 1 [DOI] 10.1016/j.cmpbup.2021.100020. [PMID] 34386786.
2021
Semantic standards of external exposome data.
Environmental research. 197 [DOI] 10.1016/j.envres.2021.111185. [PMID] 33901445.
2021
Sociodemographic, Ecological, and Spatiotemporal Factors Associated with Human Immunodeficiency Virus Drug Resistance in Florida: A Retrospective Analysis
The Journal of Infectious Diseases. 223(5):866-875 [DOI] 10.1093/infdis/jiaa413. [PMID] 32644119.
2021
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review
Journal of the American Medical Informatics Association. 28(9):2050-2067 [DOI] 10.1093/jamia/ocab098. [PMID] 34151987.
2021
Transmitted drug resistance to NRTIs and risk of virological failure in naïve patients treated with integrase inhibitors.
HIV medicine. 22(1):22-27 [DOI] 10.1111/hiv.12956. [PMID] 32964671.
2020
A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis
JMIR Public Health and Surveillance. 6(2) [DOI] 10.2196/19170. [PMID] 32412415.
2020
An external exposome-wide association study of hypertensive disorders of pregnancy.
Environment international. 141 [DOI] 10.1016/j.envint.2020.105797. [PMID] 32413622.
2020
An ontology-based documentation of data discovery and integration process in cancer outcomes research.
BMC medical informatics and decision making. 20(Suppl 4) [DOI] 10.1186/s12911-020-01270-3. [PMID] 33317497.
2020
Are Preregistration and Registered Reports Vulnerable to Hacking?
Epidemiology (Cambridge, Mass.). 31(3) [DOI] 10.1097/EDE.0000000000001162. [PMID] 31985501.
2020
Assessing mental health signals among sexual and gender minorities using Twitter data.
Health informatics journal. 26(2):765-786 [DOI] 10.1177/1460458219839621. [PMID] 30969146.
2020
Assessing the effect of data integration on predictive ability of cancer survival models.
Health informatics journal. 26(1):8-20 [DOI] 10.1177/1460458218824692. [PMID] 30672356.
2020
Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data
Journal of the American Medical Informatics Association. 27(12):1999-2010 [DOI] 10.1093/jamia/ocaa245. [PMID] 33166397.
2020
Authors’ Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis”
JMIR Public Health and Surveillance. 6(4) [DOI] 10.2196/24661. [PMID] 33174844.
2020
Causal inference and counterfactual prediction in machine learning for actionable healthcare
Nature Machine Intelligence. 2(7):369-375 [DOI] 10.1038/s42256-020-0197-y.
2020
Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis
JMIR Public Health and Surveillance. 6(3) [DOI] 10.2196/22853. [PMID] 32776889.
2020
Design and methodology challenges of environment-wide association studies: A systematic review.
Environmental research. 183 [DOI] 10.1016/j.envres.2020.109275. [PMID] 32105887.
2020
Differing impacts of global and regional responses on SARS-CoV-2 transmission cluster dynamics.
bioRxiv : the preprint server for biology. [DOI] 10.1101/2020.11.06.370999. [PMID] 33173870.
2020
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study.
Viruses. 12(9) [DOI] 10.3390/v12090921. [PMID] 32842636.
2020
Identification of important factors in an inpatient fall risk prediction model to improve the quality of care using EHR and electronic administrative data: A machine-learning approach.
International journal of medical informatics. 143 [DOI] 10.1016/j.ijmedinf.2020.104272. [PMID] 32980667.
2020
Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States.
Journal of the American Medical Informatics Association : JAMIA. 27(2):225-235 [DOI] 10.1093/jamia/ocz191. [PMID] 31711186.
2020
Mining Twitter to Assess the Determinants of Health Behavior towards Palliative Care in the United States.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020:730-739 [PMID] 32477696.
2020
Portable nanopore analytics: are we there yet?
Bioinformatics. 36(16):4399-4405 [DOI] 10.1093/bioinformatics/btaa237. [PMID] 32277811.
2020
Precision Health Analytics With Predictive Analytics and Implementation Research: JACC State-of-the-Art Review.
Journal of the American College of Cardiology. 76(3):306-320 [DOI] 10.1016/j.jacc.2020.05.043. [PMID] 32674794.
2020
Prodromal clinical, demographic, and socio-ecological correlates of asthma in adults: a 10-year statewide big data multi-domain analysis.
The Journal of asthma : official journal of the Association for the Care of Asthma. 57(11):1155-1167 [DOI] 10.1080/02770903.2019.1642352. [PMID] 31288571.
2020
Re: A Call for Deep-learning Healthcare.
Epidemiology (Cambridge, Mass.). 31(2) [DOI] 10.1097/EDE.0000000000001155. [PMID] 31856141.
2020
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
Proceedings of the National Academy of Sciences. 117(23):12522-12523 [DOI] 10.1073/pnas.2007295117. [PMID] 32381734.
2020
The global spread of 2019-nCoV: a molecular evolutionary analysis.
Pathogens and global health. 114(2):64-67 [DOI] 10.1080/20477724.2020.1725339. [PMID] 32048560.
2020
Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes.
mSphere. 5(2) [DOI] 10.1128/mSphere.00316-20. [PMID] 32350095.
2019
A data-driven and practice-based approach to identify risk factors associated with hospital-acquired falls: Applying manual and semi- and fully-automated methods.
International journal of medical informatics. 122:63-69 [DOI] 10.1016/j.ijmedinf.2018.11.006. [PMID] 30623785.
2019
ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.
BMC medical informatics and decision making. 19(Suppl 4) [DOI] 10.1186/s12911-019-0857-1. [PMID] 31391091.
2019
An Integrated Approach for Efficient Multi-Omics Joint Analysis.
ACM-BCB … … : the … ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 2019:619-625 [DOI] 10.1145/3307339.3343476. [PMID] 31588431.
2019
Association of Long-Term Dynamics in Circulating Testosterone with Serum PSA in Prostate Cancer-Free Men with Initial-PSA
Hormones & cancer. 10(4-6):168-176 [DOI] 10.1007/s12672-019-00369-y. [PMID] 31621000.
2019
Association of statin use with risk of Gleason score-specific prostate cancer: A hospital-based cohort study.
Cancer medicine. 8(17):7399-7407 [DOI] 10.1002/cam4.2500. [PMID] 31595713.
2019
Changes in patterns of mortality rates and years of life lost due to firearms in the United States, 1999 to 2016: A joinpoint analysis.
PloS one. 14(11) [DOI] 10.1371/journal.pone.0225223. [PMID] 31756227.
2019
Clinical and Epidemiologic Patterns of Chikungunya Virus Infection and Coincident Arboviral Disease in a School Cohort in Haiti, 2014-2015.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 68(6):919-926 [DOI] 10.1093/cid/ciy582. [PMID] 30184178.
2019
Clinical correlates of workplace injury occurrence and recurrence in adults.
PloS one. 14(9) [DOI] 10.1371/journal.pone.0222603. [PMID] 31513669.
2019
Exploring Lung Cancer Screening Discussions on Twitter.
Studies in health technology and informatics. 264:2011-2012 [DOI] 10.3233/SHTI190760. [PMID] 31438454.
2019
Flexible design of multiple metagenomics classification pipelines with UGENE.
Bioinformatics (Oxford, England). 35(11):1963-1965 [DOI] 10.1093/bioinformatics/bty901. [PMID] 30358807.
2019
G-quadruplex – Characterization of Functions and Potential Therapeutic Uses of Non-canonical DNA Structures.
Current medicinal chemistry. 26(16):2879-2880 [DOI] 10.2174/092986732616190820105842. [PMID] 31526337.
2019
Genomic Comparison Reveals Natural Occurrence of Clinically Relevant Multidrug-Resistant Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strains.
Applied and environmental microbiology. 85(13) [DOI] 10.1128/AEM.03030-18. [PMID] 31053578.
2019
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
Communications Biology. 2(1) [DOI] 10.1038/s42003-019-0545-9. [PMID] 31396574.
2019
Injury Burden in the United States: Accurate, Reliable, and Timely Surveillance Using Electronic Health Care Data.
American journal of public health. 109(12):1702-1706 [DOI] 10.2105/AJPH.2019.305306. [PMID] 31622141.
2019
Psychiatric disorders’ paradoxical protective effect on cardiovascular procedures and mortality.
Psychiatry research. 273 [DOI] 10.1016/j.psychres.2018.06.030. [PMID] 30642652.
2019
Raiders of the lost HARK: a reproducible inference framework for big data science
Palgrave Communications. 5(1) [DOI] 10.1057/s41599-019-0340-8.
2019
Response to letter.
Journal of psychiatric research. 116 [DOI] 10.1016/j.jpsychires.2018.12.011. [PMID] 30558836.
2019
Risk of health morbidity for the uninsured: 10-year evidence from a large hospital center in Boston, Massachusetts.
International journal for quality in health care : journal of the International Society for Quality in Health Care. 31(5):325-330 [DOI] 10.1093/intqhc/mzy175. [PMID] 30137334.
2019
Statistical thinking, machine learning.
Journal of clinical epidemiology. 116:136-137 [DOI] 10.1016/j.jclinepi.2019.08.003. [PMID] 31425737.
2019
The Common Antidiabetic Drug Metformin Reduces Odds of Developing Age-Related Macular Degeneration.
Investigative ophthalmology & visual science. 60(5):1470-1477 [DOI] 10.1167/iovs.18-26422. [PMID] 30973575.
2019
Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter.
Studies in health technology and informatics. 264:1293-1297 [DOI] 10.3233/SHTI190435. [PMID] 31438134.
2019
Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes of Staphylococcus Aureus.
ACM-BCB … … : the … ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine. 2019:259-268 [DOI] 10.1145/3307339.3342138. [PMID] 31592520.
2018
A systematic review of the effectiveness of mobile apps for monitoring and management of mental health symptoms or disorders.
Journal of psychiatric research. 107:73-78 [DOI] 10.1016/j.jpsychires.2018.10.006. [PMID] 30347316.
2018
Big data hurdles in precision medicine and precision public health
BMC Medical Informatics and Decision Making. 18(1) [DOI] 10.1186/s12911-018-0719-2. [PMID] 30594159.
2018
BMI trajectories and risk of overall and grade-specific prostate cancer: An observational cohort study among men seen for prostatic conditions.
Cancer medicine. 7(10):5272-5280 [DOI] 10.1002/cam4.1747. [PMID] 30207080.
2018
Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.
AMIA … Annual Symposium proceedings. AMIA Symposium. 2018:1601-1610 [PMID] 30815206.
2018
Development of a personalized diagnostic model for kidney stone disease tailored to acute care by integrating large clinical, demographics and laboratory data: the diagnostic acute care algorithm – kidney stones (DACA-KS).
BMC medical informatics and decision making. 18(1) [DOI] 10.1186/s12911-018-0652-4. [PMID] 30119627.
2018
Improving the impact of HIV pre-exposure prophylaxis implementation in small urban centers among men who have sex with men: An agent-based modelling study.
PloS one. 13(7) [DOI] 10.1371/journal.pone.0199915. [PMID] 29985949.
2018
Multi-drug resistant Pseudomonas aeruginosa nosocomial strains: Molecular epidemiology and evolution.
Microbial Pathogenesis. 123:233-241 [DOI] 10.1016/j.micpath.2018.07.020. [PMID] 30031889.
2018
Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine. 2018:1649-1652 [DOI] 10.1109/BIBM.2018.8621340. [PMID] 31667004.
2018
Reported Adverse Events with Painkillers: Data Mining of the US Food and Drug Administration Adverse Events Reporting System.
Drug safety. 41(3):313-320 [DOI] 10.1007/s40264-017-0611-5. [PMID] 29098610.
2018
The global burden of HIV-1 drug resistance in the past 20 years.
PeerJ. 6 [DOI] 10.7717/peerj.4848. [PMID] 29844989.
2018
The role of benzathine penicillin G in predicting and preventing all-cause acute respiratory disease in military recruits: 1991–2017
Epidemiology and Infection. 146(14):1854-1860 [DOI] 10.1017/s0950268818001838.
2017
Association between age-related reductions in testosterone and risk of prostate cancer-An analysis of patients’ data with prostatic diseases.
International journal of cancer. 141(9):1783-1793 [DOI] 10.1002/ijc.30882. [PMID] 28699177.
2017
Emergence of recombinant Mayaro virus strains from the Amazon basin.
Scientific reports. 7(1) [DOI] 10.1038/s41598-017-07152-5. [PMID] 28821712.
2017
Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis.
Studies in health technology and informatics. 245 [PMID] 29295355.
2017
Multi-drug resistant Klebsiella pneumoniae strains circulating in hospital setting: whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations.
Scientific reports. 7(1) [DOI] 10.1038/s41598-017-03581-4. [PMID] 28615687.
2017
Phylodynamic applications in 21st century global infectious disease research.
Global health research and policy. 2 [DOI] 10.1186/s41256-017-0034-y. [PMID] 29202081.
2017
Role of systemic inflammation scores for prediction of clinical outcomes in patients treated with atazanavir not boosted by ritonavir in the Italian MASTER cohort.
BMC infectious diseases. 17(1) [DOI] 10.1186/s12879-017-2322-z. [PMID] 28298195.
2017
Trends in Gene Expression Profiling for Prostate Cancer Risk Assessment: A Systematic Review.
Biomedicine hub. 2(2):1-15 [DOI] 10.1159/000472146. [PMID] 31988908.
2017
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople’s Discussions: A Case Study of Lynch Syndrome
Journal of Medical Internet Research. 19(12) [DOI] 10.2196/jmir.9266. [PMID] 29237586.
2016
An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK.
BMC medicine. 14 [DOI] 10.1186/s12916-016-0650-2. [PMID] 27401013.
2016
Computer-Aided Optimization of Combined Anti-Retroviral Therapy for HIV: New Drugs, New Drug Targets and Drug Resistance.
Current HIV research. 14(2):101-9 [PMID] 26511342.
2016
Kin of coauthorship in five decades of health science literature.
Proceedings of the National Academy of Sciences of the United States of America. 113(32):8957-62 [DOI] 10.1073/pnas.1517745113. [PMID] 27457939.
2016
Liver fibrosis progression and clinical outcomes are intertwined: role of CD4+ T-cell count and NRTI exposure from a large cohort of HIV/HCV-coinfected patients with detectable HCV-RNA: A MASTER cohort study.
Medicine. 95(29) [DOI] 10.1097/MD.0000000000004091. [PMID] 27442636.
2016
Mining Twitter to Assess the Public Perception of the “Internet of Things”.
PloS one. 11(7) [DOI] 10.1371/journal.pone.0158450. [PMID] 27391760.
2016
Moving microbiota research toward establishing causal associations that represent viable targets for effective public health interventions.
Annals of epidemiology. 26(5):306-10 [DOI] 10.1016/j.annepidem.2016.03.011. [PMID] 27133768.
2016
The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.
Global health research and policy. 1 [DOI] 10.1186/s41256-016-0014-7. [PMID] 29202063.
2016
Visual programming for next-generation sequencing data analytics.
BioData mining. 9 [DOI] 10.1186/s13040-016-0095-3. [PMID] 27127540.
2015
Two Distinct Hepatitis C Virus Genotype 1a Clades Have Different Geographical Distribution and Association With Natural Resistance to NS3 Protease Inhibitors.
Open forum infectious diseases. 2(2) [DOI] 10.1093/ofid/ofv043. [PMID] 26213689.
2014
Can multiple SNP testing in BRCA2 and BRCA1 female carriers be used to improve risk prediction models in conjunction with clinical assessment?
BMC medical informatics and decision making. 14 [DOI] 10.1186/1472-6947-14-87. [PMID] 25274085.
2014
Intra-Host Bayesian Phylogeography Infers Tempo and Mode of Neuropathogenesis in Sivmac251 Infected Cd8-Lymphocyte Depleted Rhesus Macaques
Journal of Medical Primatology. 43(5)
2014
Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings.
BMC public health. 14 [DOI] 10.1186/1471-2458-14-1035. [PMID] 25280535.
2014
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.
mBio. 5(6) [DOI] 10.1128/mBio.01824-14. [PMID] 25538191.
2014
Single tablet regimens are associated with reduced Efavirenz withdrawal in antiretroviral therapy naïve or switching for simplification HIV-infected patients.
BMC infectious diseases. 14 [DOI] 10.1186/1471-2334-14-26. [PMID] 24418191.
2014
Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS.
The Journal of general virology. 95(Pt 12):2784-2795 [DOI] 10.1099/vir.0.070318-0. [PMID] 25205684.
2013
A single early introduction of HIV-1 subtype B into Central America accounts for most current cases.
Journal of virology. 87(13):7463-70 [DOI] 10.1128/JVI.01602-12. [PMID] 23616665.
2013
Clinical evaluation of Rega 8: an updated genotypic interpretation system that significantly predicts HIV-therapy response.
PloS one. 8(4) [DOI] 10.1371/journal.pone.0061436. [PMID] 23613852.
2013
Combining Social and Genetic Networks To Study Hiv Transmission in Mixing Risk Groups
European Physical Journal-Special Topics. 222(6):1377-1387 [DOI] 10.1140/epjst/e2013-01932-x.
2013
Declining prevalence of HIV-1 drug resistance in antiretroviral treatment-exposed individuals in Western Europe.
The Journal of infectious diseases. 207(8):1216-20 [DOI] 10.1093/infdis/jit017. [PMID] 23315324.
2013
Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges.
Scientific reports. 3 [DOI] 10.1038/srep02837. [PMID] 24089188.
2013
Longitudinal analysis of intra-host simian immunodeficiency virus recombination in varied tissues of the rhesus macaque model for neuroAIDS.
The Journal of general virology. 94(Pt 11):2469-2479 [DOI] 10.1099/vir.0.055335-0. [PMID] 23963535.
2013
Molecular epidemiology of community-associated methicillin-resistant Staphylococcus aureus in the genomic era: a cross-sectional study.
Scientific reports. 3 [DOI] 10.1038/srep01902. [PMID] 23712667.
2013
Transmission of Hiv in Sexual Networks in Sub-Saharan Africa and Europe
European Physical Journal-Special Topics. 222(6):1403-1411 [DOI] 10.1140/epjst/e2013-01934-8.
2012
Combination of immune and viral factors distinguishes low-risk versus high-risk HIV-1 disease progression in HLA-B*5701 subjects.
Journal of virology. 86(18):9802-16 [DOI] 10.1128/JVI.01165-12. [PMID] 22761389.
2012
Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in Hiv-1 Transmission
PLoS One. 7(9) [DOI] 10.1371/journal.pone.0046156. [PMID] 23029421.
2012
Computational models for prediction of response to antiretroviral therapies.
AIDS reviews. 14(2):145-53 [PMID] 22627610.
2012
Factors influencing the normalization of CD4+ T-cell count, percentage and CD4+/CD8+ T-cell ratio in HIV-infected patients on long-term suppressive antiretroviral therapy.
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 18(5):449-58 [DOI] 10.1111/j.1469-0691.2011.03650.x. [PMID] 21919996.
2012
On Counting the Frequency Distribution of String Motifs in Molecular Sequences
International Journal of Biomathematics. 5(06) [DOI] 10.1142/S1793524512500556.
2012
PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences.
Evolutionary bioinformatics online. 8:261-9 [DOI] 10.4137/EBO.S9738. [PMID] 22745529.
2012
Predicting response to antiretroviral treatment by machine learning: the EuResist project.
Intervirology. 55(2):123-7 [DOI] 10.1159/000332008. [PMID] 22286881.
2012
Predictors of first-line antiretroviral therapy discontinuation due to drug-related adverse events in HIV-infected patients: a retrospective cohort study.
BMC infectious diseases. 12 [DOI] 10.1186/1471-2334-12-296. [PMID] 23145925.
2012
Prognostic value of virological and immunological responses after 6 months of antiretroviral treatment in adults with HIV-1 infection in sub-Saharan Africa.
Journal of acquired immune deficiency syndromes (1999). 59(3):236-44 [DOI] 10.1097/QAI.0b013e31824276e9. [PMID] 22327246.
2012
QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
Bioinformatics (Oxford, England). 28(1):132-3 [DOI] 10.1093/bioinformatics/btr627. [PMID] 22088846.
2012
Single-Tablet Regimen Is Associated With Reduced Efavirenz Withdrawal in Antiretroviral Na Ve Or Switching for Simplification Hiv-Infected Patients
Journal of the International Aids Society. 15(6(Suppl 4)) [DOI] 10.7448/IAS.15.6.18094.
2011
A Computational Approach To Identify Point Mutations Associated With Occult Hepatitis B: Significant Mutations Affect Coding Regions But Not Regulative Elements of Hbv
Virology Journal. 8 [DOI] 10.1186/1743-422X-8-394. [PMID] 21824402.
2011
A novel methodology for large-scale phylogeny partition.
Nature communications. 2 [DOI] 10.1038/ncomms1325. [PMID] 21610724.
2011
A prognostic model for estimating the time to virologic failure in HIV-1 infected patients undergoing a new combination antiretroviral therapy regimen.
BMC medical informatics and decision making. 11 [DOI] 10.1186/1472-6947-11-40. [PMID] 21672248.
2011
Can linear regression modeling help clinicians in the interpretation of genotypic resistance data? An application to derive a lopinavir-score.
PloS one. 6(11) [DOI] 10.1371/journal.pone.0025665. [PMID] 22110581.
2011
Clinical presentation, microbiological features and correlates of disease severity of 2009 pandemic influenza A (H1N1) infection.
European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology. 30(4):541-9 [DOI] 10.1007/s10096-010-1116-7. [PMID] 21104285.
2011
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing.
BMC bioinformatics. 12 [DOI] 10.1186/1471-2105-12-5. [PMID] 21208435.
2011
Detection of drug resistance mutations at low plasma HIV-1 RNA load in a European multicentre cohort study.
The Journal of antimicrobial chemotherapy. 66(8):1886-96 [DOI] 10.1093/jac/dkr171. [PMID] 21624929.
2011
Interpretation of genotypic HIV-1 resistance to darunavir and virological response: validation of available systems and of a new score.
Antiviral therapy. 16(4):489-97 [DOI] 10.3851/IMP1799. [PMID] 21685536.
2011
Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study).
HIV medicine. 12(4):211-8 [DOI] 10.1111/j.1468-1293.2010.00871.x. [PMID] 20731728.
2011
Update on emergence of HIV-1 resistance to antiretroviral drug classes in an Italian national database: 2007-2009.
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 17(9):1352-5 [DOI] 10.1111/j.1469-0691.2011.03563.x. [PMID] 21635664.
2010
Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models.
PloS one. 5(10) [DOI] 10.1371/journal.pone.0013753. [PMID] 21060792.
2010
Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time.
PloS one. 5(7) [DOI] 10.1371/journal.pone.0011505. [PMID] 20634893.
2010
Low rate of virological failure and maintenance of susceptibility to HIV-1 protease inhibitors with first-line lopinavir/ritonavir-based antiretroviral treatment in clinical practice.
Journal of medical virology. 82(12):1996-2003 [DOI] 10.1002/jmv.21927. [PMID] 20981785.
2010
Mid-dosing interval concentration of atazanavir and virological outcome in patients treated for HIV-1 infection.
HIV medicine. 11(5):326-33 [DOI] 10.1111/j.1468-1293.2009.00785.x. [PMID] 20070407.
2010
Resistance considerations in sequencing of antiretroviral therapy in low-middle income countries with currently available options.
Current opinion in HIV and AIDS. 5(1):27-37 [DOI] 10.1097/COH.0b013e328333ad45. [PMID] 20046145.
2010
The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispecies.
PloS one. 5(10) [DOI] 10.1371/journal.pone.0013619. [PMID] 21049051.
2009
Are mutations in HIV type-1 reverse transcriptase 245 codon predictive of abacavir hypersensitivity reaction?
Antiviral therapy. 14(1):99-101 [PMID] 19320242.
2009
Effectiveness of antiretroviral regimens containing abacavir with tenofovir in treatment-experienced patients: predictors of virological response and drug resistance evolution in a multi-cohort study.
Infection. 37(5):438-44 [DOI] 10.1007/s15010-009-8237-x. [PMID] 19669091.
2009
Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment.
Antiviral therapy. 14(3):433-42 [PMID] 19474477.
2009
Low-abundance drug resistance mutations: extending the HIV paradigm to hepatitis B virus.
The Journal of infectious diseases. 200(11):1798-9; author reply 1799 [DOI] 10.1086/647991. [PMID] 19905934.
2009
Predictors of successful genotype-guided antiretroviral therapy in treatment-experienced individuals over calendar years: a cohort study.
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. 46(3):290-4 [DOI] 10.1016/j.jcv.2009.07.013. [PMID] 19699675.
2009
Rules-based HIV-1 genotypic resistance interpretation systems predict 8 week and 24 week virological antiretroviral treatment outcome and benefit from drug potency weighting.
The Journal of antimicrobial chemotherapy. 64(3):616-24 [DOI] 10.1093/jac/dkp252. [PMID] 19620134.
2009
Stochastic modelling of genotypic drug-resistance for human immunodeficiency virus towards long-term combination therapy optimization.
Bioinformatics (Oxford, England). 25(8):1040-7 [DOI] 10.1093/bioinformatics/btn568. [PMID] 18977781.
2009
Virological suppression reduces clinical progression in patients with multiclass-resistant HIV type 1.
AIDS research and human retroviruses. 25(3):261-7 [DOI] 10.1089/aid.2008.0136. [PMID] 19292594.
2008
Selecting anti-HIV therapies based on a variety of genomic and clinical factors.
Bioinformatics (Oxford, England). 24(13):i399-406 [DOI] 10.1093/bioinformatics/btn141. [PMID] 18586740.
2007
Declining prevalence of HIV-1 drug resistance in treatment-failing patients: a clinical cohort study.
Antiviral therapy. 12(5):835-9 [PMID] 17713168.
2007
Improved interpretation of genotypic changes in the HIV-1 reverse transcriptase coding region that determine the virological response to didanosine.
The Journal of infectious diseases. 196(11):1645-53 [PMID] 18008248.
A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis (Preprint)
. [DOI] 10.2196/preprints.19170.
Authors’ Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis” (Preprint)
. [DOI] 10.2196/preprints.24661.
Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis, and Poly (ADP-ribose) polymerases (PARPs) as potential therapeutic targets
. [DOI] 10.1101/2020.05.21.109140.
Comment to Derex et al.
. [DOI] 10.31234/osf.io/6bu5h.
Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis (Preprint)
. [DOI] 10.2196/preprints.22853.
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople�s Discussions: A Case Study of Lynch Syndrome (Preprint)
. [DOI] 10.2196/preprints.9266.

Grants

Sep 2023 ACTIVE
Iron-CLAD: securely advancing AoU participant characterization with proven platforms and collaborations (All of Us Center for Linkage and Acquisition of Data (CLAD))
Role: Project Manager
Funding: UNIV OF COLORADO DENVER & ANSCHUTZ MED via NATL INST OF HLTH OD
Jun 2023 ACTIVE
A mixed methods study of syndemic factors associated with social support and viral suppression among Black men who have sex with men (MSM) in Florida
Role: Other
Funding: NATL INST OF HLTH NIDA
Apr 2023 ACTIVE
Artificial Intelligence and Counterfactually Actionable Responses to End HIV (AICARE-HIV)
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
Jan 2023 ACTIVE
Twitter networks and dynamics of discussions related to pesticides
Role: Principal Investigator
Funding: *SYNGENTA CROP PROTECTION LLC
Nov 2022 ACTIVE
Interest and uptake of long-acting antiretroviral therapy (ART) among people with HIV in Florida
Role: Principal Investigator
Funding: MERCK AND COMPANY INC RES LAB
Sep 2022 – Dec 2023
Workshop on AI Governance in For-profit and Not-for-profit Organizations
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Aug 2022 ACTIVE
CODUS – HIV outcome quality measure evaluation and stigma
Role: Principal Investigator
Funding: FL DEPT OF HLTH via US HLTH RESOURCES AND SERV ADMN HIV/AIDS
Jul 2022 ACTIVE
A Phylodynamic Artificial Intelligence framework to predict evolution of SARS-CoV-2 variants of concern in Immunocompromised persons with HIV (PhAI-CoV)
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
Sep 2021 ACTIVE
Southern HIV and Alcohol Research Consortium Biomedical Data Repository
Role: Co-Investigator
Funding: NATL INST OF HLTH NIAAA
Sep 2021 ACTIVE
Interventions to improve alcohol-related comorbidities along the gut-brain axis in persons with HIV infection
Role: Co-Investigator
Funding: NATL INST OF HLTH NIAAA
Jun 2021 – Aug 2022
Expanding genomic surveillance and epidemiology capacity in Central Florida and Southeastern US
Role: Co-Investigator
Funding: THE ROCKEFELLER FOU
May 2021 – Apr 2022
Evaluating Public Perception of Pesticides Using Social Media Data Analysis
Role: Principal Investigator
Funding: *SYNGENTA CROP PROTECTION LLC
Apr 2021 ACTIVE
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Jan 2021 ACTIVE
SCH: INT: Enabling real-time surveillance of antimicrobial resistance
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Sep 2020 ACTIVE
Using Real-world Data to Assess the Burden of Diabetes in Children and Adolescents in Florida
Role: Co-Investigator
Funding: CTRS FOR DISEASE CONTROL AND PREVENTION
Aug 2020 – Jan 2024
Using Electronic Health Records from a Large Clinical Data Research Network to Understand Cancer Burden and Cancer Risks Among Transgender and Gender Nonconforming (TGNC) Individuals
Role: Co-Investigator
Funding: NATL INST OF HLTH NCI
May 2020 ACTIVE
Forecasting trajectories of HIV transmission networks with a novel phylodynamic and deep learning framework
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
May 2020 – Mar 2022
Spatiotemporal analysis of HIV health and quality of life outcomes in Florida
Role: Principal Investigator
Funding: FL DEPT OF HLTH via US HLTH RESOURCES AND SERV ADMN HIV/AIDS
Apr 2020 – Mar 2023
RAPID: Dynamic Identification of SARS-COV-2 Transmission Epicenters in Presence of Spatial Heterogeneity (COV-DYNAMITE)
Role: Principal Investigator
Funding: NATL SCIENCE FOU
Dec 2019 – Nov 2023
Artificial Intelligence-aided Personalization on Dual Antiplatelet Therapy for Patients Underwent Coronary Stent Implantation Using Large-scale Electronic Health Records
Role: Co-Investigator
Funding: UNIV OF TEXAS HLTH SCI CTR AT HOUSTON via AMER HEART ASSOCIATION
Oct 2019 – May 2020
Miami Center for AIDS Research
Role: Principal Investigator
Funding: UNIV OF MIAMI via NATL INST OF HLTH NIAID
Apr 2019 – Mar 2021
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Jan 2019 – Dec 2021
Management of Standardized Evaluation of Retroviral HIV Infection
Role: Principal Investigator
Funding: FONDAZIONE M.I.S.I.
Nov 2018 ACTIVE
Developing Computational Methods for Surveillance of Antimicrobial Resistant Agents
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
May 2018 – Mar 2020
Spatiotemporal analysis of HIV drug resistance in Florida
Role: Principal Investigator
Funding: FL DEPT OF HLTH via US HLTH RESOURCES AND SERV ADMN
Feb 2018 – Jan 2022
HIV Dynamic Modelling for Identification of Transmission Epicenters (HIV-DYNAMITE)
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
Sep 2017 ACTIVE
Viral evolution in peripheral macrophages and brain during progression to AIDS
Role: Co-Investigator
Funding: NATL INST OF HLTH NINDS
Sep 2017 – Aug 2022
A Person-Centric Prediction Model of Job Loss based on Social Media Data and Linguistic and Linguistic Analytics
Role: Principal Investigator
Funding: NATL SCIENCE FOU
May 2017 – May 2020
Miscellaneous Donors
Role: Principal Investigator
Funding: MISCELLANEOUS DONORS
Mar 2017 – Dec 2018
Strengthening the UF Health Nursing Academic Partnership Phase IV: Generating Practice-Based Evidence for Quality Improvement (Stage 2)
Role: Co-Investigator
Funding: UF HEALTH SHANDS HOSPITAL
Jun 2016 – Oct 2017
Mapping and modeling Bacillus anthracis and Clostridiumbotulinum across North Africa and the Middle East with high resolutiongenetic sequencing and spatial analysis.
Role: Project Manager
Funding: US DEPT OF HOMELAND SECURITY
Apr 2016 – Mar 2018
Enhancing Population Impact of HIV Pre-Exposure Prophylaxis Implementation
Role: Principal Investigator
Funding: BROWN UNIV via NATL INST OF HLTH NIMH
Jan 2016 – Dec 2018
Big data approach for correlating gut microbiota with epithelial methylation pattern
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Jan 2016 – Dec 2021
ufhcc-ioa cancer-aging collaborative team grants
Role: Project Manager
Funding: UF HEALTH SHANDS HOSPITAL
Jul 2015 – Jul 2016
EuResist Engine retraining
Role: Principal Investigator
Funding: EURESIST NETWORK GEIE
Jun 2015 – May 2018
Virus discovery and epidemic tracing from high throughput metagenomic sequencing
Role: Principal Investigator
Funding: EUROPEAN COMMISSION
Mar 2015 – Mar 2018
Management of standardized evaluation of retroviral HIV infection
Role: Principal Investigator
Funding: FONDAZIONE M.I.S.I.
Dec 2011 – Jun 2016
Cholera Transmission in Gressier Region, Haiti
Role: Project Manager
Funding: NATL INST OF HLTH NIAID

Education

Doctor of Philosophy in Computer Science Engineering and Automation
2008 · Roma Tre University
Master's in Computer Science Engineering
2003 · Roma Tre University

Contact Details

Phones:
Business:
(352) 273-5860
Emails:
Business:
m.prosperi@ufl.edu
Addresses:
Business Mailing:
PO Box 100231
2004 MOWRY RD RM 4234
GAINESVILLE FL 32610
Business Street:
2004 MOWRY RD
GAINESVILLE FL 32610